PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088112.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27314.2 Da    PI: 5.1009
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202673148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+ien snrqvtfskRr g++KKA+EL++L +ae+a+++ s   +++ 
  XP_011088112.1 26 KKIENLSNRQVTFSKRRVGLFKKASELCILSGAEIAIVVHSLGKRVFS 73
                    68*************************************997777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.3761878IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-291877IPR002100Transcription factor, MADS-box
CDDcd002653.34E-321989No hitNo description
SuperFamilySSF554553.66E-241989IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-182040IPR002100Transcription factor, MADS-box
PfamPF003193.8E-202774IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184055IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-185576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLMVMMKEGS SLMKKTTQGR KKIEIKKIEN LSNRQVTFSK RRVGLFKKAS ELCILSGAEI  60
AIVVHSLGKR VFSFGHPTPD SVIDRFLNGG GPEGEEPREN CPTPKTRDYN RHYSEVCREL  120
EVEKKRKEVI EEVKRVECYG GGGGGGEFWW DEAVEGLELE ELEQYAAALE ELMKNVTMRA  180
DDLMLIHSSN SLPPPPAAVI TMPNSDMEAA ACSLDEPAMV EQNQLSSGCF DYGNCIVPHG  240
FGQGQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088112.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A022RFX22e-90A0A022RFX2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-30AGAMOUS-like 62